PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009616286.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 207aa    MW: 22935.4 Da    PI: 7.8375
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009616286.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.68.7e-33113169158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     dep++VNaKQy++Il+RRq+Rak+e+ekkl  k+rkpylheSRh hAl+R+Rg+gGrF
  XP_009616286.1 113 DEPVFVNAKQYHGILRRRQSRAKAESEKKL-LKARKPYLHESRHLHALKRARGCGGRF 169
                     79****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.2E-35111172IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.593112172IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.2E-27114169IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.2E-23115137IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860117137IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.2E-23146169IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MTSSLHYHSD GSENEQPEKQ SEAHSESSSP ATGMSVPGIA TPNMHYVMPT QLGNGNAMAQ  60
TAYPYPDPYY RSIFAPYDAQ PYPTQPYPAQ PMVHVQLMGI QQAGVPLPSD AIDEPVFVNA  120
KQYHGILRRR QSRAKAESEK KLLKARKPYL HESRHLHALK RARGCGGRFT AKKTDNQQKQ  180
DESGDNSQVN INLESEKNEV ASAENAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20112181171NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0133700.0BT013370.1 Lycopersicon esculentum clone 135390R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616286.11e-154PREDICTED: nuclear transcription factor Y subunit A-7 isoform X4
RefseqXP_016464646.11e-154PREDICTED: nuclear transcription factor Y subunit A-7 isoform X4
SwissprotQ84JP14e-63NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLM1BWA71e-125M1BWA7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000544161e-125(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.29e-51nuclear factor Y, subunit A7